Matt Femia

Software Engineer @ Capital One

About

Current: Software Engineer @ Capital One. Founder & Owner of Micrographer.

Experienced with Python, React.js, and AWS to create full-stack applications and developer tools.

Featured speaker for SingleSprout's Tech Talk Series: "Serverless Architecture with AWS Lambda".

Find more of my work on GitHub

Technologies I've used in multiple settings:

Programming: Python, R, Bash, JavaScript [Node.js, React.js, Express.js, jQuery/Ajax]

Bioinformatics: Python, R

Database Systems: MySQL, MongoDB, Redis, AWS RDS/Aurora, AWS DynamoDB, AWS Elasticache

DevOps & Cloud Tech: Docker, AWS [VPC, IAM, EC2, ELB, ECS, SES, S3, Lambda, API Gateway, SNS, SQS, Batch]

Professional Experience

Capital One

Software Engineer

September 2022 - Current

Fortune 500 financial corporation. Working within cyber engineering and architecture

The Micrographer, LLC

Founder & Owner

March 2020 - Current

eCommerce business selling open and limited edition microscope art prints.

Open Source Labs

Fullstack Software Engineer

March 2022 - June 2022

Open source accelerator. Developed AWS Lambda reporting/monitoring application

Memorial Sloan Kettering

Research Technician

March 2018 - February 2020

Research developing T-Cell immunotherapy treatments for breast cancer

William & Mary

Teaching Assistant

August 2015 - May 2017

Teaching/Research assistantship program during Master's degree

Cornell University

Research Intern

May 2014 - May 2015

Research to create molecular detection methods for global zoonotic parasites

Projects

scRNA-seq Pipeline

Github

Nextflow pipeline to run CellRanger and Scanpy on scRNA-seq data in an HPC environment

Tech Stack: Nextflow, Bash, Python (Scanpy), Docker, AWS Batch

SeqBase

API Docs

Serverless API to both retrieve and query on metadata from NGS-based studies (RNAseq, VDJseq, ATACseq) from a manually-curated database of published data

Tech Stack: Python (FastAPI), AWS [DynamoDB, Lambda, API Gateway]

Micrographer

Website

eCommerce web application for dropshipping open and limited edition microscope art prints. Private admin dashboard for site, sale, and social analytics

Tech Stack: Python (Flask, pandas, seaborn), MySQL, Docker, AWS (RDS, ECS, EC2, ElastiCache, ALB, Cloudfront, S3), Stripe API, Vendor API

ImmunoVue

Application

Flask web application built using my Clonotypy package for analyzing single cell immune repertoire (RepSeq)

Tech Stack: Python (Clonotypy, Flask, pandas, numpy, seaborn, matplotlib), MySQL, Docker, AWS (RDS, ECS, EC2, Cloudfront, S3)

Clonotypy

Basic Tutorial

Python package to analyze single cell immune repertoire (RepSeq) data. Includes tools for formatting, analytics, plotting, and querying database APIs

Tech Stack: Python: pandas, numpy, seaborn, matplotlib

IEDB Python SDK

Github Code | PyPI

Python SDK for the Immune Epitope Database (IEDB) Analysis Tools API. Available on PyPI

Tech Stack: Python: requests, pandas, unittest

ImmunoTools

Application

R adaptation of Immunovue web application, built instead using my Clonotypr package for analyzing RepSeq data

Tech Stack: R (Shiny, clonotypr, bs4Dash, shinyjs, shinyFiles, DT, many more), Docker, AWS (MySQL, EC2, ELB, ECS, ECR, Cloudfront, S3)

Clonotypr

Documentation

R Package for analyzing single cell immune repertoire (RepSeq) data. Includes tools for formatting, analytics, plotting, and querying database APIs

Tech Stack: R: Seurat, dplyr, ggplot2, tidyr, stringb, networkd3, circlize, plotly, testthat

Labstock

Github Code | Application

Inventory and lab supply order tracking application for research lab settings. Open-access version of inventory app built while working in the Klebanoff lab